Demystifying Git: The Content-Addressable Filesystem
A technical synthesis of Git's inner architecture, framing version control as a navigable manifold. This guide integrates the mechanics of SHA-1 hashing, directed acyclic graphs (DAG), and content-addressable storage to explain how Git manages project entropy.
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The Information Bottleneck of Life: Geometry, Entropy, and Topology in Biological Systems
A masterclass-style synthesis arguing that biological function and disease emerge from geometric constraints on information flow. Integrates spectral graph theory, curvature, entropy, graph signal processing, and persistent homology to frame life as a navigable manifold shaped by evolution and thermodynamics.
Notes on Machine Learning: From Linear Models to Multimodal Transformers
Personal yet rigorous notes tracing the evolution of machine learning from linear and tree-based models to Transformers, language models, and vision–language systems. Written as a structured synthesis for learning and reflection, rather than a definitive textbook.
The Illusion in the Lab Coat: How Computational Biology Can Deceive Itself
A critical essay on self-deception, statistical illusion, and methodological fragility in computational biology.
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